Table 1 Percentages of genomes masked by four repeat-masking methods
Genome | nseg | DustMasker | TRF | WindowMasker + DustMasker |
|---|---|---|---|---|
T. rubripes | 8.8 | 6.6 | 6.1 | 19 |
G. aculeatus | 9.0 | 6.6 | 5.6 | 22 |
C. elegans | 11 | 15 | 10 | 37 |
C. brenneri | 8.8 | 9.6 | 7.4 | 29 |
A. thaliana | 11 | 9.6 | 6.5 | 23 |
O. sativa | 10 | 9.6 | 8.8 | 33 |
S. cerevisiae | 7.3 | 5.2 | 3.4 | 14 |
S. pombe | 8.3 | 6.0 | 3.1 | 16 |
E. coli | 2.5 | 1.1 | 1.3 | 7.5 |
B. subtilis | 4.5 | 3.0 | 1.2 | 12 |