Enrichment of homologs in insignificant BLAST hits by co-complex network alignment

BMC Bioinformatics

Table 1 Applicability

BIN	BLAST		Co-complex network alignment
	Number of pairs	Number of queries	Number of pairs	Number of queries
E < = 10^-5	180299	16271	1599	791
10^-5 < E < = 10^-4	19238	6771	102	88
10^-4 < E < = 10^-3	15916	6566	102	86
10^-3 < E < = 0.01	23882	8626	152	118
0.01 < E < = 0.1	27273	10818	164	122
0.1 < E < = 1	53861	22861	192	155
1< E < = 10	233649	44138	288	222
10 < E < = 100	1108105	46427	787	495

Each row contains the number of query-hit pairs and the number of distinct human query proteins in a particular E-value bin, for all BLAST hits and the subset of BLAST hits which falls into the 'co-complex network alignment' category.

ISSN: 1471-2105