Figure 6
From: Structural alphabets derived from attractors in conformational space
Median global fit cRMSD against alphabet size (k). MK denotes the Structural Alphabets derived in this study. The test set comprises 798 high resolution protein structures. Symbols denote the alphabet type: (filled circle) the series of MxKy alphabets, (filled triangle) M32K25 alphabet, (empty circle) CGT2004 alphabet, (empty diamond) MSM2000 alphabet and (filled square) the alphabet resulting from the GA optimisation of all fragments contained in the MxKy series.