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Table 3 Irredundant vs. maximal patterns.

From: Classification of protein sequences by means of irredundant patterns

No.

s 1

s 2

|s1| = m

|s2| = m

m+ n

Maximals

Irredundants

% Of irredundants

1.

1alo

1bjt

597

760

1357

≫16697

1256

≪7.5

2.

1qax

1cxp

316

466

782

8397

682

8.1

3.

1gai

1nmt

472

227

699

7037

612

8.7

4.

1cvu

1lgr

511

368

879

9014

787

8.7

5.

1gpe

1yrg

392

343

735

6853

653

9.5

6.

1qqj

3pcc

415

236

651

5090

566

11.1

7.

1bxk

1ofg

352

220

572

3549

489

13.8

8.

1ebf

2nac

169

188

357

1126

277

24.6

9.

1a03

1mho

90

88

178

257

108

42.0

10.

1gpt

1ayj

47

50

97

64

45

70.3

  1. Number of irredundant and maximal common patterns over 10 pairs of protein sequences taken from experiments in Table 4. Rows are sorted according to the percentage of irredundants over the total number of maximal patterns.