Classification of protein sequences by means of irredundant patterns

BMC Bioinformatics

Table 4 Experiments of Liao and Noble.

		*Training*		*Test*				*Training*		*Test*
No.	Target family	Pos.	Neg.	Pos.	Neg.	No.	Target family	Pos.	Neg.	Pos.	Neg.
0	7.3.5.2	12	2330	9	1746	27	7.3.10.1	11	423	95	3653
1	2.56.1.2	11	2509	8	1824	28	3.32.1.11	46	3880	5	421
2	3.1.8.1	19	3002	8	1263	29	3.32.1.13	43	3627	8	674
3	3.1.8.3	17	2686	10	1579	30	7.3.6.1	33	3203	9	873
4	1.27.1.1	12	2890	6	1444	31	7.3.6.2	16	1553	26	2523
5	1.27.1.2	10	2408	8	1926	32	7.3.6.4	37	3591	5	485
6	3.42.1.1	29	3208	10	1105	33	2.38.4.1	30	3682	5	613
7	1.45.1.2	33	3650	6	663	34	2.1.1.1	90	3102	31	1068
8	1.4.1.1	26	2256	23	1994	35	2.1.1.2	99	3412	22	758
9	2.9.1.2	17	2370	14	1951	36	3.32.1.1	42	3542	9	759
10	1.4.1.2	41	3557	8	693	37	2.38.4.3	24	2946	11	1349
11	2.9.1.3	26	3625	5	696	38	2.1.1.3	113	3895	8	275
12	1.4.1.3	40	3470	9	780	39	2.1.1.4	88	3033	33	1137
13	2.44.1.2	11	307	140	3894	40	2.38.4.5	26	3191	9	1104
14	2.9.1.4	21	2928	10	1393	41	2.1.1.5	94	3240	27	930
15	3.42.1.5	26	2876	13	1437	42	7.39.1.2	20	3204	7	1121
16	3.2.1.2	37	3002	16	1297	43	2.52.1.2	12	3060	5	1275
17	3.42.1.8	34	3761	5	552	44	7.39.1.3	13	2083	14	2242
18	3.2.1.3	44	3569	9	730	45	1.36.1.2	29	3477	7	839
19	3.2.1.4	46	3732	7	567	46	3.32.1.8	40	3374	11	927
20	3.2.1.5	46	3732	7	567	47	1.36.1.5	10	1199	26	3117
21	3.2.1.6	48	3894	5	405	48	7.41.5.1	10	2241	9	2016
22	2.28.1.1	18	1246	44	3044	49	7.41.5.2	10	2241	9	2016
23	3.3.1.2	22	3280	7	1043	50	1.41.1.2	36	3692	6	615
24	3.2.1.7	48	3894	5	405	51	2.5.1.1	13	2345	11	1983
25	2.28.1.3	56	3875	6	415	52	2.5.1.3	14	2525	10	1803
26	3.3.1.5	13	1938	16	2385	53	1.41.1.5	17	1744	25	2563

Experiments presented in [8] and associated to 54 protein families of SCOP version 1.53, here ordered by progressive number. For each target family ID is detailed the number of positive and negative sequences of training and test.

ISSN: 1471-2105