Amino acid classification based spectrum kernel fusion for protein subnuclear localization

BMC Bioinformatics

Table 2 Performance comparison on 714 Nuc-PLoc subnuclear protein dataset

*Subnuclear location*	*Size*	*Nuc-PLoc*	*SpectrumKernel+* I
		MCC	SP	SE	MCC
*Chromatin*	99	0.60	0.7131	0.8788	0.7573
*Heterochromatin*	22	0.52	0.6364	0.3182	0.4386
*Nuclear envelope*	61	0.53	0.8689	0.8689	0.8569
*Nuclear matrix*	29	0.52	0.3750	0.3103	0.3171
*Nuclear pore complex*	79	0.70	0.9367	0.9367	0.9290
*Nuclear speckle*	67	0.43	0.7606	0.8060	0.7608
*Nucleolus*	307	0.57	0.9231	0.9772	0.9133
*Nucleoplasm*	37	0.31	0.7857	0.2973	0.4688
*Nuclear PML body*	13	0.32	0.7143	0.3846	0.5181
*Overall Accuracy*		67.40%		84.03%

ISSN: 1471-2105