Amino acid classification based spectrum kernel fusion for protein subnuclear localization

BMC Bioinformatics

Table 3 Performance comparison on 504 Lei subnuclear protein dataset

*Subnuclear location*	*size*	*Lei SVM ensemble*		*SpectrumKernel+* I			*SpectrumKernel+* II
		SE	MCC	SP	SE	MCC	SP	SE	MCC
*PML Body*	38	0.2900	0.1720	0.2093	0.2368	0.1630	0.1111	0.1053	0.0463
*Nuclear Lamina*	55	0.4360	0.3380	0.4167	0.4545	0.3718	0.5185	0.5091	0.4611
*Nuclear Speckles*	56	0.3570	0.3630	0.8611	0.5536	0.6636	0.8667	0.6964	0.7539
*Chromatin*	61	0.1970	0.2600	0.4643	0.4262	0.3813	0.6429	0.5902	0.5703
*Nucleoplasm*	75	0.2270	0.2060	0.4500	0.4800	0.3834	0.5256	0.5467	0.4649
*Nucleolus*	219	0.7670	0.3670	0.8603	0.8995	0.7992	0.8979	0.9635	0.8795
*Overall Accuracy*		50.00%		64.29%			71.23%

ISSN: 1471-2105