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Table 2 Four pure epistatisis models used in [18].

From: Identifying main effects and epistatic interactions from large-scale SNP data via adaptive group Lasso

Model 1-3

h2= 0.3, p a = 0.4, q b = 0.4

Model 1-4

h2= 0.2, p a = 0.4, q b = 0.4

 

AA

Aa

aa

 

AA

Aa

aa

BB

0.077

0.689

0.417

BB

0.086

0.536

0.641

Bb

0.763

0.150

0.491

Bb

0.677

0.275

0.096

bb

0.196

0.657

0.247

bb

0.219

0.413

0.712

Model 1-5

h2 = 0.1, p a = 0.4, q b = 0.4

Model 1-6

h2 = 0.05, p a = 0.4, q b = 0.4

 

AA

Aa

aa

 

AA

Aa

aa

BB

0.068

0.299

0.017

BB

0.005

0.179

0.251

Bb

0.289

0.044

0.285

Bb

0.211

0.100

0.026

bb

0.048

0.262

0.174

bb

0.156

0.098

0.156

  1. Here we only provide four pure epistatisis models used in comparison with Lasso. The complete model list used in comparison with BEAM is provided in our supplementary document (please see Additional File 1).
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BMC Bioinformatics

ISSN: 1471-2105

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