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Table 5 Ontology-based search with 'Nucleotide binding' GO term.

From: An ontology-based search engine for protein-protein interactions

Query protein   Partner protein  
HPRD_ID Function HPRD_ID Function
HPRD_02944 ATP binding HPRD_02431 Acyltransferase activity
HPRD_01368 ATP binding HPRD_02147 ATP binding
HPRD_01368 ATP binding HPRD_02300 ATPase activity
HPRD_02147 ATP binding HPRD_12171 Catalytic activity
HPRD_01368 ATP binding HPRD_02110 Extracellular matrix structural constituent
HPRD_02944 ATP binding HPRD_02682 GTPase activity
HPRD_09468 ATP binding HPRD_08986 Phospholipase activity
HPRD_01368 ATP binding HPRD_02610 Protein binding
HPRD_02944 ATP binding HPRD_03913 Protein binding
HPRD_09468 ATP binding HPRD_01496 Protein serine/threonine kinase activity
HPRD_09468 ATP binding HPRD_02619 Protein serine/threonine kinase activity
HPRD_09468 ATP binding HPRD_03479 Protein serine/threonine kinase activity
HPRD_05802 ATP binding HPRD_04066 Protein serine/threonine kinase activity
HPRD_09468 ATP binding HPRD_05428 Protein serine/threonine kinase activity
HPRD_05802 ATP binding HPRD_02963 Receptor activity
HPRD_09468 ATP binding HPRD_01158 Structural constituent of myelin sheath
HPRD_02147 ATP binding HPRD_01235 Transcription regulator activity
HPRD_09468 ATP binding HPRD_00591 Translation regulator activity
HPRD_09468 ATP binding HPRD_06774 Translation regulator activity
HPRD_09468 ATP binding HPRD_06802 Translation regulator activity
HPRD_09468 ATP binding HPRD_09084 Translation regulator activity
HPRD_01368 ATP binding HPRD_03051 Transporter activity
HPRD_16742 FAD binding HPRD_11762 DNA binding
HPRD_16742 FAD binding HPRD_02171 Hydrolase activity
HPRD_04100 GTP binding HPRD_07135 Acyltransferase activity
HPRD_04100 GTP binding HPRD_01721 Auxiliary transport protein activity
HPRD_04100 GTP binding HPRD_01722 Auxiliary transport protein activity
HPRD_04100 GTP binding HPRD_04738 GTP binding
HPRD_04738 GTP binding HPRD_06716 GTP binding
HPRD_11978 GTP binding HPRD_00743 GTPase activity
HPRD_11978 GTP binding HPRD_00766 GTPase activity
HPRD_04100 GTP binding HPRD_03297 GTPase activity
HPRD_10360 GTP binding HPRD_03297 GTPase activity
HPRD_04100 GTP binding HPRD_12228 GTPase activity
HPRD_04738 GTP binding HPRD_12228 GTPase activity
HPRD_10360 GTP binding HPRD_06692 GTPase activity
HPRD_10360 GTP binding HPRD_08555 GTPase activity
HPRD_11978 GTP binding HPRD_09191 GTPase activity
HPRD_11978 GTP binding HPRD_09973 GTPase activity
HPRD_11978 GTP binding HPRD_11820 GTPase activity
HPRD_10360 GTP binding HPRD_04398 Protein binding
HPRD_11978 GTP binding HPRD_01265 Protein serine/threonine kinase activity
HPRD_06419 GTP binding HPRD_03384 Protein serine/threonine phosphatase activity
HPRD_04100 GTP binding HPRD_06288 RNA binding
HPRD_04738 GTP binding HPRD_01853 Structural constituent of cytoskeleton
HPRD_04100 GTP binding HPRD_01451 Structural molecule activity
HPRD_06419 GTP binding HPRD_01859 Transcription factor activity
HPRD_06419 GTP binding HPRD_16515 Transcription regulator activity
HPRD_04100 GTP binding HPRD_03967 Ubiquitin-specific protease activity
HPRD_04738 GTP binding HPRD_03967 Ubiquitin-specific protease activity
HPRD_09704 Nucleotide binding HPRD_03356 Signal transducer activity
HPRD_09704 Nucleotide binding HPRD_16544 Transcription factor activity
HPRD_09704 Nucleotide binding HPRD_03221 Transcription regulator activity
HPRD_13115 Nucleotide binding HPRD_03015 Unknown
HPRD_09704 Nucleotide binding HPRD_04484 Unknown
  1. In HPRD the ontology-based search found 70 interactions involving a protein annotated with 'Nucleotide binding'. Only 5 interactions have a protein with an explicit annotation of 'Nucleotide binding'. The remaining 65 interactions were inferred by finding a protein annotated with a more specialized term such as 'ATP binding', 'FAD binding' or 'GTP binding'. Due to space limit, 15 interactions (7 self-interactions and 8 interactions involving a protein with unknown function) are not shown here.