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Table 5 Ontology-based search with 'Nucleotide binding' GO term.

From: An ontology-based search engine for protein-protein interactions

Query protein

 

Partner protein

 

HPRD_ID

Function

HPRD_ID

Function

HPRD_02944

ATP binding

HPRD_02431

Acyltransferase activity

HPRD_01368

ATP binding

HPRD_02147

ATP binding

HPRD_01368

ATP binding

HPRD_02300

ATPase activity

HPRD_02147

ATP binding

HPRD_12171

Catalytic activity

HPRD_01368

ATP binding

HPRD_02110

Extracellular matrix structural constituent

HPRD_02944

ATP binding

HPRD_02682

GTPase activity

HPRD_09468

ATP binding

HPRD_08986

Phospholipase activity

HPRD_01368

ATP binding

HPRD_02610

Protein binding

HPRD_02944

ATP binding

HPRD_03913

Protein binding

HPRD_09468

ATP binding

HPRD_01496

Protein serine/threonine kinase activity

HPRD_09468

ATP binding

HPRD_02619

Protein serine/threonine kinase activity

HPRD_09468

ATP binding

HPRD_03479

Protein serine/threonine kinase activity

HPRD_05802

ATP binding

HPRD_04066

Protein serine/threonine kinase activity

HPRD_09468

ATP binding

HPRD_05428

Protein serine/threonine kinase activity

HPRD_05802

ATP binding

HPRD_02963

Receptor activity

HPRD_09468

ATP binding

HPRD_01158

Structural constituent of myelin sheath

HPRD_02147

ATP binding

HPRD_01235

Transcription regulator activity

HPRD_09468

ATP binding

HPRD_00591

Translation regulator activity

HPRD_09468

ATP binding

HPRD_06774

Translation regulator activity

HPRD_09468

ATP binding

HPRD_06802

Translation regulator activity

HPRD_09468

ATP binding

HPRD_09084

Translation regulator activity

HPRD_01368

ATP binding

HPRD_03051

Transporter activity

HPRD_16742

FAD binding

HPRD_11762

DNA binding

HPRD_16742

FAD binding

HPRD_02171

Hydrolase activity

HPRD_04100

GTP binding

HPRD_07135

Acyltransferase activity

HPRD_04100

GTP binding

HPRD_01721

Auxiliary transport protein activity

HPRD_04100

GTP binding

HPRD_01722

Auxiliary transport protein activity

HPRD_04100

GTP binding

HPRD_04738

GTP binding

HPRD_04738

GTP binding

HPRD_06716

GTP binding

HPRD_11978

GTP binding

HPRD_00743

GTPase activity

HPRD_11978

GTP binding

HPRD_00766

GTPase activity

HPRD_04100

GTP binding

HPRD_03297

GTPase activity

HPRD_10360

GTP binding

HPRD_03297

GTPase activity

HPRD_04100

GTP binding

HPRD_12228

GTPase activity

HPRD_04738

GTP binding

HPRD_12228

GTPase activity

HPRD_10360

GTP binding

HPRD_06692

GTPase activity

HPRD_10360

GTP binding

HPRD_08555

GTPase activity

HPRD_11978

GTP binding

HPRD_09191

GTPase activity

HPRD_11978

GTP binding

HPRD_09973

GTPase activity

HPRD_11978

GTP binding

HPRD_11820

GTPase activity

HPRD_10360

GTP binding

HPRD_04398

Protein binding

HPRD_11978

GTP binding

HPRD_01265

Protein serine/threonine kinase activity

HPRD_06419

GTP binding

HPRD_03384

Protein serine/threonine phosphatase activity

HPRD_04100

GTP binding

HPRD_06288

RNA binding

HPRD_04738

GTP binding

HPRD_01853

Structural constituent of cytoskeleton

HPRD_04100

GTP binding

HPRD_01451

Structural molecule activity

HPRD_06419

GTP binding

HPRD_01859

Transcription factor activity

HPRD_06419

GTP binding

HPRD_16515

Transcription regulator activity

HPRD_04100

GTP binding

HPRD_03967

Ubiquitin-specific protease activity

HPRD_04738

GTP binding

HPRD_03967

Ubiquitin-specific protease activity

HPRD_09704

Nucleotide binding

HPRD_03356

Signal transducer activity

HPRD_09704

Nucleotide binding

HPRD_16544

Transcription factor activity

HPRD_09704

Nucleotide binding

HPRD_03221

Transcription regulator activity

HPRD_13115

Nucleotide binding

HPRD_03015

Unknown

HPRD_09704

Nucleotide binding

HPRD_04484

Unknown

  1. In HPRD the ontology-based search found 70 interactions involving a protein annotated with 'Nucleotide binding'. Only 5 interactions have a protein with an explicit annotation of 'Nucleotide binding'. The remaining 65 interactions were inferred by finding a protein annotated with a more specialized term such as 'ATP binding', 'FAD binding' or 'GTP binding'. Due to space limit, 15 interactions (7 self-interactions and 8 interactions involving a protein with unknown function) are not shown here.