Table 2 Total runtime. Amount of time required to process all proteins with a signal peptides, in seconds.
From: Decoding HMMs using the k best paths: algorithms and applications
| Â | Probability only | Tree-based | Matrix-based |
|---|---|---|---|
k = 100 | 84 | 145 | 90 |
k = 200 | 161 | 303 | 166 |
k = 300 | 231 | 425 | 241 |
k = 400 | 296 | 553 | 317 |