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Table 3 Proteins with good labellings. Proteins with good labellings.

From: Decoding HMMs using the k best paths: algorithms and applications

  τ= 0 τ= 1 τ= 2 τ= 3 τ= 4 τ= 5 Phobius
k = 1 (Viterbi) 2 11 19 27 46 59 137
k = 10 9 21 33 44 67 83 157
k = 100 34 52 64 85 110 129 198
k = 1000 46 66 89 123 143 168 214
1-best 4 18 26 38 62 79 166
  1. For k paths and a correctness measure, we count the number of proteins for which at least one of the top k paths gives a prediction that satisfies that correctness measure. The bottom line gives the results for the 1-best decoding algorithm used in Phobius. Presented is the data set without signal peptide (n = 247).