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Table 2 Number of correct predictions and accuracy in top k candidates for 36 unknown reactions

From: Reaction graph kernels predict EC numbers of unknown enzymatic reactions in plant secondary metabolism

  

Coverage

EC main

EC sub

EC subsub

RGK

TOP1

100%

22 (61.1%)

14 (38.9%)

12 (33.3%)

 

TOP3

 

56 (51.9%)

30 (27.8%)

24 (22.2%)

 

TOP5

 

86 (47.8%)

37 (20.6%)

27 (15.0%)

E-zyme

TOP1

61.1%

14 (63.6%)

10 (45.5%)

8 (36.4%)

 

TOP3

 

42 (63.6%)

24 (36.4%)

18 (27.3%)

 

TOP5

 

57 (51.8%)

30 (27.3%)

24 (21.8%)

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BMC Bioinformatics

ISSN: 1471-2105

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