Table 1 Comparison of the score function in PEAKS and the new score function.
From: Better score function for peptide identification with ETD MS/MS spectra
Score function | Accuracy I | Accuracy II | Average length | Predictions with correct subsequences of length at least x | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Â | Â | Â | Â | x = 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 |
PEAKS 5.1 | 0.325 | 0.342 | 13.70 | 0.56 | 0.46 | 0.40 | 0.31 | 0.24 | 0.16 | 0.13 | 0.12 |
New score | 0.553 | 0.559 | 14.26 | 0.84 | 0.77 | 0.64 | 0.54 | 0.43 | 0.37 | 0.32 | 0.28 |