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Table 2 The frequencies that different fragment ion types have observed peaks in the training ETD data.

From: Better score function for peptide identification with ETD MS/MS spectra

Ion

z'

c

y

z

b

a

Frequency

81.9%

79.9%

70.2%

45.3%

40.5%

37.9%

Ion

z'2+

y-H2O

C-H2O

z'-NH3

a-NH3

b-H2O

Frequency

34.3%

30.8%

29.3%

27.2%

24.9%

24.5%