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Table 2 Structure prediction of the local regions in two large proteins

From: Structure prediction for the helical skeletons detected from the low resolution protein density map

ID #AAa #hlcesb #sticksc #Possible Topologiesd #Valid Topologiese #Generated structuresf Rankg RMSDh Prcti
1A0P_G1   14 4 384384 69738 6973800 10448 3.96 0.15%
1A0P_G2   14 4 384384 84733 8473300 14673 4.11 0.17%
1A0P 290 14 8    5.9E+13 3741775   0%
1WQ3_G1   20 4 1860480 184255 18425500 40485 6.47 0.22%
1WQ3_G2   20 4 1860480 280708 28070800 18412 4.65 0.07%
1WQ3 322 20 8    5.17E+14 32104299   0%
  1. a: the number of amino acids in the protein
  2. b: the number of helices in the protein
  3. c: the number of skeletons used for structure prediction in the region
  4. d: the number of all possible topologies in the region
  5. e: the number of valid topologies after applying distance and length screening
  6. f: the number of structures generated in the region or the total number of the structures evaluated for two regions
  7. g: the highest rank of the structure with the correct topology among the generated structures
  8. h: the RMSD of the highest ranked structure with the correct topology among the generated structures
  9. i: the percentage of the rank for the structure with the highest rank and the correct topology