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Table 3 Presence of the statistical biases in confirmed type III effectors in rhizobia. Feature 1 means at least 10% Ser residues within the first 50 amino acids.

From: Computational prediction of type III secreted proteins from gram-negative bacteria

    Features
Species Effector GI number 1 2 3
Sino NopA 55668600 0 1 1
  NopP 63103266 1 0 0
  NolB 19749321 1 1 1
  NolX 52631913 1 0 1
  NopC* 255767012 1 1 1
  NopL* 2182720 1 1 0
  NopP* 2182742 1 0 0
  NopB* 2182730 1 1 1
  NopX* 2182728 1 0 1
Meso NopB* 13475298 1 1 1
  NolX* 13475296 1 1 1
Brady NodN* 27379070 0 1 0
  NolB* 27376923 1 0 1
  1. Feature 2 means that an Ile, Leu, Val, or Pro is located at the third or fourth residue of the protein. Feature 3 means no Asp or Glu residues within the first 12 amino acids. The matrix is boolean, i.e., 1 means true and 0 means false. The involved rhizobial species are abbreviated as Sino for Sinorhizobium, Meso for Mesorhizobium, and Brady for Bradyrhizobium. The effectors marked by * are from the four strains considered in this study. The third column lists GI numbers from NCBI GenBank.
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