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Table 1 Significant BBH r-window gene clusters and corresponding operons. Nine out of the top twelve based on log E value and corresponding operons. Numbers in brackets indicate number of genes in the cluster over number of genes in the operon.

From: Bidirectional best hit r-window gene clusters

log E

BBH r-window gene cluster

Operon

-13

atpC, atpD, atpG, atpA, atpH, atpF, atpE, atpB

atpIBEFHAGDC (8/8)

-12

secE, nusG, rplK, rplA, rplJ, rplL, rpoB, rpoC

secE-nusG (2/2), rplKAJL-rpoBC (6/6)

-11

hisG, hisD, hisB, hisH, hisA, hisF, hisI

hisLGDCBHAFI (7/8)

-10

fliE, fliF, fliG, fliH, fliI, fliJ, fliK

fliFGHIJK (7/6)

-9

menE, menC, menB, yfbB, menD, menF

menFD-yfbB-menBCE (6/6)

-9

rbsD, rbsA, rbsC, rbsB, rbsK, rbsR

rbsDACBKR (6/6)

-8

pnp, rpsO, truB, rbfA, infB, nusA, yhbC

metY-yhbC-nusA-infB-rbfA-truB-rpsO-pnp (7/7)

-8

dppF, dppD, dppC, dppB, dppA, yhjX

dppABCDF (6/5)

-7

oppA, oppB, oppC, oppD, oppF

oppABCDF (5/5)