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Table 1 Precision-recall AUC improvement using weighted distance.

From: Improved protein surface comparison and application to low-resolution protein structure data

Representation

Weights

AUC

Improvement a)

AASurf

-

0.481

-

CACNO

-

0.604

-

Surf-Back

0.5/0.5

0.605

0.001 (0.124)

 

0.4/0.6

0.617

0.013 (0.136)

 

0..3/0.7

0.619

0.015 (0.138)

 

0.2/0.8

0.612

0.008 (0.131)

  1. Note that a random retrieval has a precision-recall AUC of 0.017.
  2. a) Difference of Precision-recall AUC of Surf-Back to CACNO. Difference to AASurf is shown in the parentheses.
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BMC Bioinformatics

ISSN: 1471-2105

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