Table 2 The performance of prior knowledge based identification methods on PPI networks (MYP) with the aid of protein functional pairs (T 2)
From: Prior knowledge based mining functional modules from Yeast PPI networks with gene ontology
Parameter | Algo. | MYP T2 | Algo. | MY P | ||||
|---|---|---|---|---|---|---|---|---|
#modules | –log(p – value) | Coverage | #modules | –log(p – value) | Coverage |  |  |  |
r = 5 | ssMCL | 352 | 7.77136 | 0.97342 | MCL | 483 | 4.68541 | 0.97214 |
t = 0.05 | ssMCODE | 99 | 11.04522 | 0.30314 | MCODE | 137 | 7.66 | 0.27335 |
s = 6500 | ssNG | 286 | 6.95497 | 0.85456 | NG | 522 | 4.23116 | 0.83421 |
k = 350 | ssHC cc | 201 | 6.07873 | 0.92314 | HC cc | 173 | 4.1128 | 0.87769 |
k = 350 | ssHC nb | 220 | 5.96928 | 0.93412 | HC nb | 173 | 4.0578 | 0.86120 |