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Table 5 Results of RecMotif on biological data

From: RecMotif: a novel fast algorithm for weak motif discovery

Data

Discovered

Model

Published

c-fos

ccatattaggacatct

(16, 3)

ccatattaggacatct

DHFR

ttcgcgccaaact

(13, 2)

ttcgcgccaaact

E.coli CRP.

tgtgaaxxagxtcaca tt

(18, 6)

tgtgaxxxxgxtcaca

LexA

tactgtatataxatacagta

(20, 5)

tactgtatatatatacagta

Pre-proinsulin

cctcagcccc

(10, 2)

cctcagcccc,

agacccagca

agacccagca,

  

ccctaatgggcca

(13, 2)

ccctaatgggcca

 
  1. This table shows the results of RecMotif on real biological data.
  2. *note: ’x’ in the consensus means all bases appear with opportunity less than 50 percent