Table 5 Protein pairs with the MaxSub scores of various methods
From: Linear predictive coding representation of correlated mutation for protein sequence alignment
Protein 1 (SCOP classification) | Protein 2 (SCOP classification) | Sequence identity | PPA | PPA_SS | CMPA_PPA | CMPA_PPA_SS |
|---|---|---|---|---|---|---|
d1xd7a_ (a.4.5.55) | d1ldja1 (a.4.5.34) | 14.9 | 0.1197 | 0.1256 | 0.4042 | 0.4089 |
d1mvea_ (b.29.1.2) | d1ulea_ (b.29.1.3) | 13 | 0.0515 | 0.0483 | 0.2201 | 0.2278 |
d1uwva2 (c.66.1.40) | d1p1ca_ (c.66.1.16) | 9.4 | 0.0472 | 0.0533 | 0.2743 | 0.2996 |
d1lrza3 (d.108.1.4) | d1tiqa_ (d.108.1.1) | 15.4 | 0.2458 | 0.2908 | 0.4420 | 0.4418 |