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Table 2 Correlation between predicted folding rates and experimental folding rates using sequence length and other estimated predictors on IvankovData.

From: SeqRate: sequence-based protein folding type classification and rates prediction

 

L

LRCO

CO

LRCN

α-helical content

β -sheet content

Coil content

Two-state folding rate

-0.32

0.72

0.61

0.68

-0.51

0.57

0.13

Multi-state folding rate

-0.80

0.46

0.33

0.55

-0.18

0.11

0.05

  1. L = protein sequence length, LRCO = estimated long-range contact order, CO = estimated contact order in [15], LRCN = estimated long-range contact number. IvankovData is used and there are 37 two-state proteins and 24 multi-state proteins.
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BMC Bioinformatics

ISSN: 1471-2105

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