Table 2 Classifier performance using BLAST score as the sole feature for ortholog detection
From: Detection of gene orthology from gene co-expression and protein interaction networks
Datasets | Adaboost j48 AUC | NB AUC | SVM AUC | Log. Reg. AUC | Ensemble AUC |
|---|---|---|---|---|---|
Mouse-Human (PPI) | 87.79 (4) | 90.15 (3) | 77.31 (5) | 90.29 (2) | 90.30 (1) |
Mouse-Human (gene-coexpression) | 89.80 (4) | 70.4 (5) | 90.40 (1) | 90.40 (1) | 90.40 (1) |
Mouse-Fly (PPI) | 87.58 (4) | 88.47 (3) | 70.17 (5) | 92.01 (1) | 88.89 (2) |
Mouse-Yeast (PPI) | 89.85 (5) | 91.89 (2) | 90.78 (3) | 95.46 (1) | 91.45 (4) |
Human-Fly (PPI) | 81.35 (4) | 87.70 (2) | 65.90 (5) | 88.90 (1) | 84.42 (3) |
Human-Yeast (PPI) | 82.97 (3) | 81.26 (4) | 63.68 (5) | 85.50 (1) | 84.19 (2) |
Yeast-Fly (PPI) | 73.02 (3) | 72.49 (4) | 56.80 (5) | 74.86 (1) | 74.48 (2) |
Average Rank (PPI Only) | 3.83 | 3 | 4.67 | 1.17 | 2.33 |
Average Rank (PPI+GeneCoexpression) | 3.86 | 3.28 | 4.28 | 1.28 | 2.28 |