Table 3 Classifier performance using all features for ortholog detection
From: Detection of gene orthology from gene co-expression and protein interaction networks
Datasets | Adaboost j48 AUC | NB AUC | SVM AUC | Log. Reg. AUC | Ensemble AUC |
|---|---|---|---|---|---|
Mouse-Human (PPI) | 95.19 (2) | 88.72 (5) | 90.78 (3) | 89.57 (4) | 96.18 (1) |
Mouse-Human (gene-coexpression) | 89.80 (5) | 94.1 (4) | 97.50 (1) | 97.30 (2) | 96.10 (3) |
Mouse-Fly (PPI) | 90.31 (1) | 85.81 (3) | 81.28 (4) | 80.67 (5) | 88.94 (2) |
Mouse-Yeast (PPI) | 92.04 (3) | 85.50 (4) | 79.63 (5) | 95.60 (1) | 95.50 (2) |
Human-Fly (PPI) | 88.18 (1) | 83.10 (4) | 75.03 (5) | 87.04 (3) | 87.20 (2) |
Human-Yeast (PPI) | 82.83 (2) | 81.26 (4) | 78.22 (5) | 81.57 (3) | 84.84 (1) |
Yeast-Fly (PPI) | 74.52 (1) | 69.36 (4) | 64.57 (5) | 74.33 (2) | 72.78 (3) |
Average Rank (PPI Only) | 1.67 | 4 | 4.5 | 3 | 1.83 |
Average Rank (PPI+GeneCoexpression) | 2.14 | 4 | 4 | 2.86 | 2 |