Table 1 Comparison of kBSPS in terms of AUC, F1-measure and classification time with other state-of-the-art kernels using the CV and CL evaluation scenarios
From: A fast and effective dependency graph kernel for PPI relation extraction
AIMed | BioInfer | IEPA | |||||||
|---|---|---|---|---|---|---|---|---|---|
Kernels | AUC | F 1 | AUC | F 1 | AUC | F 1 | |||
CV/CL | CV/CL | time(s) | CV/CL | CV/CL | time(s) | CV/CL | CV/CL | time(s) | |
SL | 83.5/77.5 | 54.5/42.6 | 10.8 | 81.1/74.9 | 60.0/46.2 | 24.0 | 81.1/75.6 | 69.3/60.4 | 1.8 |
SpT | 66.1/56.8 | 27.3/28.6 | 44.5 | 74.1/64.2 | 53.4/43.0 | 79.8 | 75.9/54.2 | 64.7/15.5 | 0.6 |
APG | 84.6/77.6 | 56.2/43.8 | 3.7 | 81.5/69.6 | 60.7/39.1 | 6.2 | 83.9/82.4 | 73.1/59.6 | 0.4 |
kBSPS | 75.1/72.1 | 44.6/40.3 | 0.4 | 75.2/73.3 | 55.1/47.6 | 1.5 | 83.2/81.0 | 70.5/70.7 | < 0.1 |