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Table 2 Number of IRs and IIRs found using different irScan filters

From: A framework for automated enrichment of functionally significant inverted repeats in whole genomes

 

Amin=2.2

Amin=2.3

Amin=2.4

 

IRs

IIRs

IRs

IIRs

IRs

IIRs

G min =18

260568

175

218041

175

169017

171

G min =19

251543

174

209739

174

161903

170

G min =20

243973

174

202877

174

156063

170

G min =21

232543

173

192640

173

147592

169

G min =22

222404

173

183721

173

140333

169

G min =23

211825

171

174453

171

132789

168

G min =24

201301

171

165371

171

125521

168

G min =25

193352

170

158493

170

119957

167

G min =26

180251

168

147397

168

111281

165

  1. Shows the number of IR candidates generated by irScan on the 5 chromosomes of the Arabidopsis genome using various parameters. Parameters D min and P max were fixed at 60% and 9.99×10-11 respectively while A min and G min were varied as shown. IIRs are the number of Identified IRs that uniquely match one of the known 190 pre-miRNA.
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BMC Bioinformatics

ISSN: 1471-2105

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