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Table 2 Number of IRs and IIRs found using different irScan filters

From: A framework for automated enrichment of functionally significant inverted repeats in whole genomes

  Amin=2.2 Amin=2.3 Amin=2.4
  IRs IIRs IRs IIRs IRs IIRs
G min =18 260568 175 218041 175 169017 171
G min =19 251543 174 209739 174 161903 170
G min =20 243973 174 202877 174 156063 170
G min =21 232543 173 192640 173 147592 169
G min =22 222404 173 183721 173 140333 169
G min =23 211825 171 174453 171 132789 168
G min =24 201301 171 165371 171 125521 168
G min =25 193352 170 158493 170 119957 167
G min =26 180251 168 147397 168 111281 165
  1. Shows the number of IR candidates generated by irScan on the 5 chromosomes of the Arabidopsis genome using various parameters. Parameters D min and P max were fixed at 60% and 9.99×10-11 respectively while A min and G min were varied as shown. IIRs are the number of Identified IRs that uniquely match one of the known 190 pre-miRNA.