Skip to main content

Table 2 Summary of Search Results When MS/MS FDR ≤ 0.01

From: PEPPI: a peptidomic database of human protein isoforms for proteomics experiments

 

IPI

PEPPI_KB

PEPPI_without_SNP

PEPPI_with_SNP

Size (M)

47

115.2

1181.1

1769.7

Elapsed Time(h:mm:ss)

0:11:05

0:10:39

1:02:32

1:33:04

MS2 FDR

0.01000

0.00992

0.00996

0.00999

Target MS2 hits

22685

21473

68137

116363

Decoy MS2 hits

114

107

341

584

Peptide FDR

0.01575

0.01527

0.01242

0.01571

Target peptide hits

125

129

159

188

Decoy peptide hits

2

2

2

3

Protein/gene FDR

0.02797

0.02778

0.02439

0.02339

Target protein/gene hits

368/141

142

162

169

Decoy protein/gene hits

5/2

2

2

2

PEPPI FDR

 

0.01376

0.01283

0.01376

Target PEPPI hits

 

433

1549

2886

Decoy PEPPI hits

 

3

10

20