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Table 2 Summary of Search Results When MS/MS FDR ≤ 0.01

From: PEPPI: a peptidomic database of human protein isoforms for proteomics experiments

  IPI PEPPI_KB PEPPI_without_SNP PEPPI_with_SNP
Size (M) 47 115.2 1181.1 1769.7
Elapsed Time(h:mm:ss) 0:11:05 0:10:39 1:02:32 1:33:04
MS2 FDR 0.01000 0.00992 0.00996 0.00999
Target MS2 hits 22685 21473 68137 116363
Decoy MS2 hits 114 107 341 584
Peptide FDR 0.01575 0.01527 0.01242 0.01571
Target peptide hits 125 129 159 188
Decoy peptide hits 2 2 2 3
Protein/gene FDR 0.02797 0.02778 0.02439 0.02339
Target protein/gene hits 368/141 142 162 169
Decoy protein/gene hits 5/2 2 2 2
PEPPI FDR   0.01376 0.01283 0.01376
Target PEPPI hits   433 1549 2886
Decoy PEPPI hits   3 10 20