Skip to main content

Table 4 Data Generation Protocols

From: PEPPI: a peptidomic database of human protein isoforms for proteomics experiments

  cDNA Sequence Length Open Reading Frame (ORF) Stop Codon Toleration
EXON_KB Whole Length Annotated ORF Only Not Tolerated
E_E_KB ≤ 240 bp Annotated ORF Only Not Tolerated
E_I_TH ≤ 240 bp All 3 ORFs In 3’ end segment
I_E_TH ≤ 240 bp All 3 ORFs Not Tolerated
E_E_TH ≤ 240 bp All 3 ORFs In 3’ end segment
  1. We limited the lengths of the combination transcripts to 240 bp, with a flanking sequence of 120 bp on each side of the splice site.