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Table 2 Accuracy improvement by the profile information.

From: Robust and accurate prediction of noncoding RNAs from aligned sequences

 

ROC score (stdev)

Family

Original BPLA kernel

Profile BPLA kernel

C/D snoRNA

0.91 (0.02)

0.95 (0.02)

H/ACA snoRNA

0.93 (0.03)

0.97 (0.02)

miRNA precursor

0.96 (0.01)

0.97 (0.01)

Riboswitch

0.86 (0.04)

0.92 (0.05)

tRNA

0.98 (0.02)

1.00 (0.00)

average

0.93 (0.02)

0.96 (0.02)

  1. Family: name of the target ncRNA family. ROC score: area under the ROC curve. Profile BPLA kernel, which utilizes the profile information of alignment data, is compared to the original BPLA kernel for single sequences.
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BMC Bioinformatics

ISSN: 1471-2105

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