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Table 4 Accuracy on the sequence-based alignment dataset.

From: Robust and accurate prediction of noncoding RNAs from aligned sequences

 

ROC score (stdev)

Family

Profile BPLA kernel

Profile LA kernel

Profile stem kernel

RNAz

C/D snoRNA

0.95 (0.01)

0.80 (0.04)

0.80 (0.02)

0.77 (0.02)

H/ACA snoRNA

0.96 (0.02)

0.77 (0.17)

0.87 (0.03)

0.94 (0.03)

miRNA precursor

0.97 (0.01)

0.69 (0.03)

0.92 (0.02)

0.96 (0.01)

Riboswitch

0.92 (0.03)

0.38 (0.19)

0.79 (0.05)

0.94 (0.02)

tRNA

1.00 (0.00)

0.88 (0.03)

0.94 (0.03)

0.95 (0.02)

average

0.96 (0.02)

0.70 (0.09)

0.86 (0.03)

0.91 (0.02)

  1. Family: name of the target ncRNA family. ROC score: area under the ROC curve. Profile BPLA kernel is compared to the other prediction methods which also utilize the profile information of alignment data: Profile LA kernel, Profile stem kernel, and RNAz.
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BMC Bioinformatics

ISSN: 1471-2105

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