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Table 1 Examples of DODO identified ortholog groups that were not identified in InParanoid.

From: DODO: an efficient orthologous genes assignment tool based on domain architectures. Domain based ortholog detection

Ensembl human gene id

number of species

Average a.a. length

domain

 

ENSP00000375160

96

199.7

Ribosomal_L22

 

ENSP00000348580

94

118.8

Ribosomal_S26e

 

ENSP00000307786

91

110.7

Cytochrom_C

 

ENSP00000236900

91

122.6

Ribosomal_S25

 

ENSP00000337019

90

99.9

Ribosomal_S21e

 

ENSP00000316649

89

477.6

Oxysterol_BP

 

ENSP00000158771

87

242.2

DER1

 

ENSP00000280665

87

413.9

DCP1

 

ENSP00000360803

86

164.5

zf-DNL

 

ENSP00000352137

86

298.6

Fcf2

 

ENSP00000359368

83

461.7

RPAP2_Rtr1

 

ENSP00000254101

81

314.4

AMPKBI

 

ENSP00000253719

81

399.1

Asp

 

ENSP00000380214

80

507.4

Sugar_tr

 
  1. Examples of the 80+ ortholog groups found by DODO but not in InParanoid. Their average amino acid length and domain composition are shown.
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BMC Bioinformatics

ISSN: 1471-2105

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