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Figure 1 | BMC Bioinformatics

Figure 1

From: A machine learning pipeline for quantitative phenotype prediction from genotype data

Figure 1

Distance and regression weights for top-correlated SNPs For each top-ranked SNP, a set of corresponding top-correlated SNPs at a given correlation threshold is identified. All the chromosome distances from reference top-ranked SNP, and all regression weights are pooled together across all top-ranked SNPs. Numbers inside boxplots indicate the number of top-correlated SNPs; the number of top-ranked SNPs is 51 for the CD8 phenotype shown here. (a) Distributions of chromosome distances between top-ranked and top-correlated SNPs (bp, natural log scale). (b) Distribution of L1L2 regression weights for top-correlated SNPs. Average weight of top-ranked SNPs is 0.07.

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