From: Exploiting physico-chemical properties in string kernels
KERNEL | A*2301 | B*5801 | A*0201 | |||
---|---|---|---|---|---|---|
auROC | (std) | auROC | (std) | auROC | (std) | |
WD | 0.7307 | (0.0900) | 0.9314 | (0.0279) | 0.9485 | (0.0076) |
Poly (pca) | 0.8363 | (0.0808) | 0.9428 | (0.0336) | 0.9354 | (0.0111) |
Poly (zscale) | 0.7964 | (0.0727) | 0.8778 | (0.0637) | 0.9052 | (0.0070) |
Poly (blosum50) | 0.8220 | (0.0442) | 0.4948 | (0.0560) | 0.4729 | (0.0246) |
RBF (pca) | 0.8277 | (0.0904) | 0.9396 | (0.0303) | 0.9345 | (0.0114) |
RBF (zscale) | 0.7847 | (0.0787) | 0.9235 | (0.0347) | 0.9157 | (0.0072) |
RBF (blosum50) | 0.8204 | (0.0864) | 0.9509 | (0.0317) | 0.9520 | (0.0072) |
WD-Poly (pca) | 0.7879* | (0.0858) | 0.9406* | (0.0319) | 0.9495* | (0.0084) |
WD-Poly (zscale) | 0.7983* | (0.0902) | 0.9499* | (0.0348) | 0.9483 | (0.0073) |
WD-Poly (blosum50) | 0.8307* | (0.1077) | 0.9491* | (0.0224) | 0.9490* | (0.0070) |
WD-RBF (pca) | 0.8133* | (0.0806) | 0.9510* | (0.0265) | 0.9486* | (0.0051) |
WD-RBF (zscale) | 0.7782* | (0.1222) | 0.9487* | (0.0434) | 0.9500* | (0.0074) |
WD-RBF (blosum50) | 0.8312* | (0.0993) | 0.9571* | (0.0265) | 0.9503* | (0.0067) |