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Table 1 Impact of gene loss (P lo s s ) and chromosomal inversions (P inversi o n ) on the performance of QUOTA-ALIGN using the simulated genomes.

From: Screening synteny blocks in pairwise genome comparisons through integer programming

  P loss = 0 P loss = 0.3 P loss = 0.6 P loss = 0.9
P inversion = 0 100.0 100.0 100.0 100.0
P inversion = 0.005 99.6 99.5 99.3 98.6
P inversion = 0.01 97.9 97.6 97.2 94.3
P inversion = 0.015 95.5 94.2 90.9 89.6
P inversion = 0.02 91.3 89.4 86.6 80.3
  1. For each case of varying P lo s s and P inversi o n ,, we calculate the percentage of true homolog pairs recovered by QUOTA-ALIGN (100.0 means that every homolog gene pair between the two simulated genomes is identified by QUOTA-ALIGN).