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Table 2 Summary of synteny blocks before and after quota-based screening in the four examples used in this study.

From: Screening synteny blocks in pairwise genome comparisons through integer programming

Example # of anchors # of blocks Percentage of regions exceed quota Run time CoGe link
A. thaliana vs. A. lyrata (1:1) before 27381 388 76.3% 0.73s http://bit.ly/aT6Uyx
  after 20826 69 0.1%   
A. thaliana vs. poplar (4:2) before 16257 1084 18.4% 0.55s http://bit.ly/9qXnMg
  after 14839 910 1.9%   
A. thaliana vs. A. thaliana (1:1) before 6523 440 22.0% 0.25s http://bit.ly/akpvUh
  after 5477 315 3.5%   
grape vs. grape (2:2) before 4459 270 9.0% 0.24s http://bit.ly/bCSHZG
  after 4297 259 2.7%   
  1. For each case, summary of blocks before screening is in the first row, and blocks after screening is in the second row. The running time for QUOTA-ALIGN is based on a single-threaded 3.0 GHz Intel Xeon CPU.