From: Multithreaded comparative RNA secondary structure prediction using stochastic context-free grammars
Sequence | Program | Ref. basepairs | Pred. basepairs | Sensitivity, % | Selectivity, % | Correlation, % |
---|---|---|---|---|---|---|
tRNA (M) | PPfold | 20 | 21 | 100.0 | 100.0 | 100.0 |
tRNA (M) | pfold | 20 | 21 | 100.0 | 100.0 | 100.0 |
tRNA (H) | PPfold | 20 | 21 | 100.0 | 100.0 | 100.0 |
tRNA (H) | pfold | 20 | 21 | 100.0 | 100.0 | 100.0 |
RNaseP (M) | PPfold | 110 | 110 | 86.4 | 96.0 | 91.2 |
RNaseP (M) | pfold | 110 | 110 | 86.4 | 96.0 | 91.2 |
RNaseP (H) | PPfold | 110 | 69 | 43.6 | 71.6 | 57.6 |
RNaseP (H) | pfold | 110 | 69 | 43.6 | 71.6 | 57.6 |
SSU (M) | PPfold | 468 | 420 | 74.4 | 86.1 | 80.2 |
SSU (M) | pfold | 468 | 0 | 0.0 | 0.0 | 0.0 |
SSU (H) | PPfold | 468 | 373 | 68.4 | 89.1 | 78.8 |
SSU (H) | pfold | 468 | 373 | 68.4 | 89.1 | 78.8 |
LSU (M) | PPfold | 839 | 830 | 58.2 | 62.5 | 60.3 |
LSU (M) | pfold | 839 | 0 | 0.0 | 0.0 | 0.0 |
LSU (H) | PPfold | 839 | 754 | 52.2 | 61.0 | 56.6 |
LSU (H) | pfold | 839 | 0 | 0.0 | 0.0 | 0.0 |