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Table 1 Predicted Recurrent Breakpoints in 36 Prostate Samples.

From: Detection of recurrent rearrangement breakpoints from copy number data

Breakpoint Type

Rearrangement Type(s)

# Predicted

# in DGV

# Novel

Recurrent Probes

Highly Conserved Breakpoints

80

66

14

Recurrent Genes

Gene Truncations

6

5

1

Pairs of Recurrent Probes

Germline or Somatic

Structural Variants

38

28

10

Pairs of Recurrent Genes

Intrachromosomal Fusion Genes

2

1

1

With Fusion Gene Config.*

Interchromosomal Fusion Genes

2

2

0

  1. Breakpoint types are described by the indicated rearrangement type. '# Predicted' is the number of predictions that are significant with FDR < 0.01. '# in DGV' counts the breakpoints near known structural variants in the Database of Genomic Variants (DGV). '# Novel' is the number of predictions that are not near any known variant in DGV.
  2. * Novel pairs of recurrent gene breakpoints consistent with the fusion gene configuration.
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