Table 1 CPU time and memory requirements for SiLiX and three state-of-the-art programs on the dataset of similarity pairs extracted from the HOGENOM database [9].

SiLiX

138

0.4

SiLiX + hcluster_sg⁽¹⁰⁰⁾ [24]

552

23

hcluster_sg[24]

5604

99

MC-UPGMA[25]

>27000⁽¹⁾

0.5

MCL[26]

>15000⁽²⁾

78

⁽¹⁾ estimated time (20 rounds took 2711 min., and 200 rounds were required in [25])

⁽²⁾ manually stopped