Table 3 Evaluation of SiLiX performances on mitochondrial genes of metazoan taxa.
From: Ultra-fast sequence clustering from similarity networks with SiLiX
Gene | Nb. Seq. | Nb. SiLiX families | Nb. Seq. 1st fam. (%) | Nb. Seq. 2nd fam. (%) | Nb. Seq. 3rd fam. (%) | Nb. Singletons (%) |
|---|---|---|---|---|---|---|
ATP8 | 1815 | 26 | 959 (52.8) | 294 (16.2) | 144 (7.9) | 258 (14.2) |
ATP6 | 1821 | 2 | 1814 (99.6) | 2 (0.1) | - | 5 (0.3) |
COX1 | 1821 | 1 | 1820 (99.9) | - | - | 1 (0.1) |
COX2 | 1821 | 1 | 1818 (99.8) | - | - | 3 (0.2) |
COX3 | 1821 | 1 | 1821 (100) | - | - | - |
CYTB | 1821 | 1 | 1820 (99.9) | - | - | 1 (0.1) |
ND1 | 1821 | 1 | 1821 (100) | - | - | - |
ND2 | 1821 | 11 | 1714 (94.1) | 53 (2.9) | 3 (0.2) | 34 (1.9) |
ND3 | 1821 | 2 | 1813 (99.6) | 2 (0.1) | - | 6 (0.3) |
ND4 | 1821 | 2 | 1812 (99.5) | 2 (0.1) | - | 7 (0.4) |
ND4L | 1821 | 7 | 1758 (96.5) | 4 (0.2) | 3 (0.2) | 47 (2.6) |
ND5 | 1821 | 2 | 1815 (99.7) | 2 (0.1) | - | 4 (0.2) |
ND6 | 1821 | 16 | 1366 (75.0) | 313 (17.2) | 55 (3.0) | 45 (2.5) |