TY - JOUR AU - Perlman, Z. E. AU - Slack, M. D. AU - Feng, Y. AU - Mitchison, T. J. AU - Wu, L. F. AU - Altschuler, S. J. PY - 2004 DA - 2004// TI - Multidimensional drug profiling by automated microscopy JO - Science VL - 306 UR - https://doi.org/10.1126/science.1100709 DO - 10.1126/science.1100709 ID - Perlman2004 ER - TY - JOUR AU - Yarrow, J. C. AU - Feng, Y. AU - Perlman, Z. E. AU - Kirchhausen, T. AU - Mitchison, T. J. PY - 2003 DA - 2003// TI - Phenotypic screening of small molecule libraries by high throughput cell imaging JO - Comb Chem High Throughput Screening VL - 6 UR - https://doi.org/10.2174/138620703106298527 DO - 10.2174/138620703106298527 ID - Yarrow2003 ER - TY - STD TI - Boutros M, Kiger AA, Armknecht A, Kerr K, Hild M, Koch R, Haas SA, Paro R, Perrimon N: Genome-wide RNAi analysis of growth and viability in drosophila cells. Science 303: 832–835. ID - ref3 ER - TY - JOUR AU - Peng, H. PY - 2008 DA - 2008// TI - Bioimage informatics: a new area of engineering biology JO - Bioinformatics VL - 24 UR - https://doi.org/10.1093/bioinformatics/btn346 DO - 10.1093/bioinformatics/btn346 ID - Peng2008 ER - TY - JOUR AU - Weirauch, M. T. AU - Wong, C. K. AU - Byrne, A. B. AU - Stuart, J. M. PY - 2008 DA - 2008// TI - Information-based methods for predicting gene function from systematic gene knock-downs JO - Bioinformatics VL - 9 ID - Weirauch2008 ER - TY - JOUR AU - Clemens, J. C. AU - Worby, C. A. AU - Simonson-Leff, N. AU - Muda, M. AU - Maehama, T. AU - Hemmings, B. A. AU - Dixon, J. E. PY - 2000 DA - 2000// TI - Use of double-stranded RNA interference in Drosophila cell lines to dissect signal transduction pathways JO - Proc Natl Acad Sci VL - 97 UR - https://doi.org/10.1073/pnas.110149597 DO - 10.1073/pnas.110149597 ID - Clemens2000 ER - TY - JOUR AU - Hannon, G. J. PY - 2002 DA - 2002// TI - RNA interference JO - Nature VL - 418 UR - https://doi.org/10.1038/418244a DO - 10.1038/418244a ID - Hannon2002 ER - TY - JOUR AU - Echeverri, C. J. AU - Perrimon, N. PY - 2006 DA - 2006// TI - High-throughput RNAi screening in cultured cells: a user's guide JO - Nat Rev Genet VL - 7 UR - https://doi.org/10.1038/nrg1836 DO - 10.1038/nrg1836 ID - Echeverri2006 ER - TY - JOUR AU - Agaisse, H. AU - Burrack, L. AU - Philips, J. AU - Rubin, E. AU - Perrimon, N. AU - Higgins, D. E. PY - 2005 DA - 2005// TI - Genome-wide RNAi screen for host factors required for intracellular bacterial infection JO - Science VL - 309 UR - https://doi.org/10.1126/science.1116008 DO - 10.1126/science.1116008 ID - Agaisse2005 ER - TY - JOUR AU - Carpenter, A. E. AU - Sabatini, D. M. PY - 2004 DA - 2004// TI - Systematic genome-wide screens of gene function JO - Nature Reviews Genetics VL - 5 UR - https://doi.org/10.1038/nrg1248 DO - 10.1038/nrg1248 ID - Carpenter2004 ER - TY - JOUR AU - Wang, J. AU - Zhou, X. AU - Bradley, P. L. AU - Chang, S. F. AU - Perrimon, N. AU - Wong, S. T. C. PY - 2008 DA - 2008// TI - Cellular Phenotype Recognition for High-Content RNA Interference Genome-Wide Screening JO - J Biomol Screen VL - 13 UR - https://doi.org/10.1177/1087057107311223 DO - 10.1177/1087057107311223 ID - Wang2008 ER - TY - JOUR AU - Zhou, J. AU - Peng, H. PY - 2007 DA - 2007// TI - Automatic recognition and annotation of gene expression patterns of fly embryos JO - Bioinformatics VL - 23 UR - https://doi.org/10.1093/bioinformatics/btl680 DO - 10.1093/bioinformatics/btl680 ID - Zhou2007 ER - TY - CHAP AU - Orlov, N. AU - Johnston, J. AU - Macura, T. AU - Shamir, L. AU - Goldberg, I. ED - Goro, O. b. i. n. a. t. a. ED - Ashish, D. u. t. t. a. PY - 2007 DA - 2007// TI - Computer Vision for Microscopy Applications BT - Vision Systems: Segmentation and Pattern Recognition PB - I-Tech CY - Vienna, Austria ID - Orlov2007 ER - TY - JOUR AU - Jones, T. R. AU - Kang, I. H. AU - Wheeler, D. B. AU - Lindquist, R. A. AU - Rapallo, A. AU - Sabatini, D. M. AU - Golland, P. AU - Carpenter, A. E. PY - 2008 DA - 2008// TI - CellProfiler Analysis: data exploration and analysis software for complex image-based screens JO - Bioinformatics VL - 9 ID - Jones2008 ER - TY - JOUR AU - Shamir, L. AU - Orlov, N. AU - Eckley, D. M. AU - Macura, T. AU - Goldberg, I. PY - 2008 DA - 2008// TI - IICBU 2008 - a proposed benchmark suite for biological image analysis JO - Medical & Biological Engineering & Computing VL - 46 UR - https://doi.org/10.1007/s11517-008-0380-5 DO - 10.1007/s11517-008-0380-5 ID - Shamir2008 ER - TY - JOUR AU - Orlov, N. AU - Shamir, L. AU - Macura, T. AU - Johnston, J. AU - Eckley, D. M. AU - Goldberg, I. PY - 2008 DA - 2008// TI - WNDCHRM - An Open Source Utility for Biological Image Analysis JO - BMC - Source Code for Biology and Medicine VL - 3 UR - https://doi.org/10.1186/1751-0473-3-13 DO - 10.1186/1751-0473-3-13 ID - Orlov2008 ER - TY - JOUR AU - Shamir, L. AU - Eckley, D. M. AU - Delaney, J. PY - 2009 DA - 2009// TI - An Image Informatics Method for Automated Quantitative Analysis of Phenotype Visual Similarities JO - IEEE/NIH Life Science Systems and Application Workshop VL - LiSSA2009 ID - Shamir2009 ER - TY - JOUR AU - Boland, M. V. AU - Murphy, R. F. PY - 2001 DA - 2001// TI - A neural network classifier capable of recognizing the patterns of all major subcellular structures in fluorescence microscope images of HeLa cells JO - Bioinformatics VL - 17 UR - https://doi.org/10.1093/bioinformatics/17.12.1213 DO - 10.1093/bioinformatics/17.12.1213 ID - Boland2001 ER - TY - JOUR AU - Boland, M. V. AU - Markey, M. AU - Murphy, R. F. PY - 1998 DA - 1998// TI - Automated Recognition of Patterns Characteristic of Subcellular Structures in Fluorescence Microscopy Images JO - Cytometry VL - 33 UR - https://doi.org/3.0.CO;2-R DO - 3.0.CO;2-R ID - Boland1998 ER - TY - JOUR AU - Huang, K. AU - Murphy, R. F. PY - 2004 DA - 2004// TI - Boosting accuracy of automated classification of fluorescence microscope images for location proteomics JO - BMC Bioinformatics VL - 5 UR - https://doi.org/10.1186/1471-2105-5-78 DO - 10.1186/1471-2105-5-78 ID - Huang2004 ER - TY - JOUR AU - Hamilton, N. A. AU - Pantelic, R. S. AU - Hanson, K. AU - Teasdale, R. D. PY - 2007 DA - 2007// TI - Fast automated cell phenotype image classification JO - Bioinformatics VL - 8 ID - Hamilton2007 ER - TY - JOUR AU - Nanni, L. AU - Lumini, A. AU - Lin, Y. AU - Hsu, C. AU - Lin, C. PY - 2010 DA - 2010// TI - Fusion of systems for automated cell phenotype image classification JO - Expert Systems with Applications VL - 37 UR - https://doi.org/10.1016/j.eswa.2009.06.062 DO - 10.1016/j.eswa.2009.06.062 ID - Nanni2010 ER - TY - CHAP AU - Donoho, D. AU - Duncan, M. PY - 1999 DA - 1999// BT - Digital Curvelet Transform: Strategy, Implementation and Experiments ID - Donoho1999 ER - TY - JOUR AU - Starck, J. AU - Candes, E. AU - Donoho, D. PY - 2002 DA - 2002// TI - The Curvelet transform for image denoising JO - IEEE Transactions Image Processing VL - 11 UR - https://doi.org/10.1109/TIP.2002.1014998 DO - 10.1109/TIP.2002.1014998 ID - Starck2002 ER - TY - CHAP AU - Candes, E. AU - Donoho, D. ED - Aldroubi, A. ED - Laine, A. F. ED - Unser, M. A. PY - 2000 DA - 2000// BT - Curvelets: multiresolution representation, and scaling laws PB - Wavelet Applications in Signal and ImageProcessing VIII CY - Proceeding of the SPIE ID - Candes2000 ER - TY - JOUR AU - Candes, E. AU - Demanet, L. AU - Donoho, D. AU - Ying, L. PY - 2006 DA - 2006// TI - Fast discrete curvelet transforms JO - Multiscale Model Simul VL - 5 UR - https://doi.org/10.1137/05064182X DO - 10.1137/05064182X ID - Candes2006 ER - TY - JOUR AU - Ma, J. AU - Plonka, G. PY - 2010 DA - 2010// TI - The Curvelet Transform: A review of recent applications JO - IEEE Signal Processing Magazine VL - 27 UR - https://doi.org/10.1109/MSP.2009.935453 DO - 10.1109/MSP.2009.935453 ID - Ma2010 ER - TY - JOUR AU - Ni, L. AU - Leng, H. PY - 2003 DA - 2003// TI - Curvelet transform and its application in image retrieval JO - 3rd International Symposium on Multispectral Image Processing and Pattern Recognition, Proceedings of SPIE VL - 5286 UR - https://doi.org/10.1117/12.539906 DO - 10.1117/12.539906 ID - Ni2003 ER - TY - CHAP AU - Majumdar, A. AU - Ward, R. ED - Kresimir, D. e. l. a. c. ED - Mislav, G. r. g. i. c. ED - Marian Stewart, B. a. r. t. l. e. t. t. PY - 2008 DA - 2008// TI - Multiresolution methods in face recognition BT - Recent Advances in Face Recognition ID - Majumdar2008 ER - TY - JOUR AU - Mandal, T. AU - Wu, Q. J. AU - Yuan, Y. PY - 2009 DA - 2009// TI - Curvelet based face recognition via dimension reduction JO - Signal Processing VL - 89 UR - https://doi.org/10.1016/j.sigpro.2009.03.007 DO - 10.1016/j.sigpro.2009.03.007 ID - Mandal2009 ER - TY - CHAP AU - Sumana, I. AU - Islam, M. AU - Zhang, D. AU - Lu, G. PY - 2008 DA - 2008// TI - Content based image retrieval using curvelet transform BT - IEEE 10th Workshop on Multimedia Signal Processing, 11-61, Cairns, Australia ID - Sumana2008 ER - TY - CHAP AU - Geback, T. AU - Koumoutsakos, P. PY - 2009 DA - 2009// TI - Edge detection in microscopy images using curvelets BT - BMC Bioinformatics ID - Geback2009 ER - TY - JOUR AU - Haralick, R. PY - 1979 DA - 1979// TI - Statistical and Structural Approaches to Texture JO - Proceedings of the IEEE VL - 67 UR - https://doi.org/10.1109/PROC.1979.11328 DO - 10.1109/PROC.1979.11328 ID - Haralick1979 ER - TY - JOUR AU - Chebira, A. AU - Barbotin, Y. AU - Jackson, C. AU - Merryman, T. AU - Srinivasa, G. AU - Murphy, R. F. AU - Kovacevic, J. PY - 2007 DA - 2007// TI - A multiresolution approach to automated classification of protein subcellular location images JO - Bioinformatics VL - 8 ID - Chebira2007 ER - TY - BOOK AU - Kuncheva, L. I. PY - 2004 DA - 2004// TI - Combining Pattern Classifiers: Methods and Algorithms UR - https://doi.org/10.1002/0471660264 DO - 10.1002/0471660264 ID - Kuncheva2004 ER - TY - JOUR AU - Kuncheva, L. I. AU - Rodriguez, J. J. AU - Plumpton, C. O. AU - Linden, D. E. AU - Johnston, S. J. PY - 2010 DA - 2010// TI - Random subspace ensembles for fMRI classification JO - IEEE Trans Med Imaging VL - 29 UR - https://doi.org/10.1109/TMI.2009.2037756 DO - 10.1109/TMI.2009.2037756 ID - Kuncheva2010 ER - TY - JOUR AU - Ho, T. K. PY - 1998 DA - 1998// TI - The random subspace method for constructing decision forests JO - IEEE Transactions on PAMI VL - 20 UR - https://doi.org/10.1109/34.709601 DO - 10.1109/34.709601 ID - Ho1998 ER - TY - JOUR AU - Daubechies, I. PY - 1990 DA - 1990// TI - The wavelet transform, time-frequency localisation and signal processing JO - IEEE Trans Inform Theory VL - 36 UR - https://doi.org/10.1109/18.57199 DO - 10.1109/18.57199 ID - Daubechies1990 ER - TY - JOUR AU - Gabor, D. PY - 1946 DA - 1946// TI - Theory of communication JO - J IEEE VL - 93 ID - Gabor1946 ER - TY - JOUR AU - Manjunath, B. AU - Ma, W. PY - 1996 DA - 1996// TI - Texture Features for Browsing and Retrieval of Image Data JO - IEEE Trans on Pattern Analysis and Machine Intelligence VL - 18 UR - https://doi.org/10.1109/34.531803 DO - 10.1109/34.531803 ID - Manjunath1996 ER - TY - CHAP AU - Vapnik, V. PY - 1995 DA - 1995// BT - The Nature of Statistical Learning Theory UR - https://doi.org/10.1007/978-1-4757-2440-0 DO - 10.1007/978-1-4757-2440-0 ID - Vapnik1995 ER - TY - JOUR AU - Breiman, L. PY - 2001 DA - 2001// TI - Random Forests JO - Machine Learning VL - 45 UR - https://doi.org/10.1023/A:1010933404324 DO - 10.1023/A:1010933404324 ID - Breiman2001 ER - TY - CHAP AU - Gangeh, M. J. AU - Kamel, M. S. AU - Duin, P. W. PY - 2010 DA - 2010// TI - Random Subspace Method in Text Categorization BT - International Conference on Pattern Recognition (ICPR) ID - Gangeh2010 ER - TY - JOUR AU - Loo, L. H. AU - Wu, L. AU - Altschuler, S. J. PY - 2007 DA - 2007// TI - Image-based multivariate profiling of drug responses from single cells JO - Nature Methods VL - 4 ID - Loo2007 ER - TY - JOUR AU - Newberg, J. AU - Murphy, R. F. PY - 2008 DA - 2008// TI - A framework for the automated analysis of subcellular patterns in human protein atlas images JO - J Proteome Res VL - 7 UR - https://doi.org/10.1021/pr7007626 DO - 10.1021/pr7007626 ID - Newberg2008 ER - TY - CHAP AU - Gehler, P. AU - Nowozin, S. PY - 2009 DA - 2009// TI - On Feature Combination for Multiclass Object Classification BT - IEEE International Conference on Computer Vision (ICCV) ID - Gehler2009 ER - TY - JOUR AU - Soh, L. AU - Tsatsoulis, C. PY - 1999 DA - 1999// TI - Texture Analysis of SAR Sea Ice Imagery Using Gray Level Co-Occurrence Matrices JO - IEEE Transactions on Geoscience and Remote Sensing VL - 37 UR - https://doi.org/10.1109/36.752194 DO - 10.1109/36.752194 ID - Soh1999 ER - TY - JOUR AU - Clausi, D. PY - 2002 DA - 2002// TI - An analysis of co-occurrence texture statistics as a function of grey level quantization JO - Can J Remote Sensing VL - 28 UR - https://doi.org/10.5589/m02-004 DO - 10.5589/m02-004 ID - Clausi2002 ER - TY - JOUR AU - Breiman, L. PY - 1996 DA - 1996// TI - Bagging predictors JO - Machine Learning VL - 24 ID - Breiman1996 ER - TY - JOUR AU - Freund, Y. AU - Schapire, R. E. PY - 1997 DA - 1997// TI - A Decision-Theoretic Generalization of on-Line Learning and an Application to Boosting JO - Journal of Computer and System Sciences VL - 55 UR - https://doi.org/10.1006/jcss.1997.1504 DO - 10.1006/jcss.1997.1504 ID - Freund1997 ER -