Table 1 Differentiating features between various multi-population tag SNPs selection programs
From: SNPPicker: High quality tag SNP selection across multiple populations
| SNPPicker | Snagger | multiPopTagSelect | Feature |
|---|---|---|---|
| X | X | Simultaneous multi-population optimization | |
| X | X | Optimizes genotyping score | |
| X | X | Optimizes conflicting tag SNPs | |
| X | X | X | Functional class prioritization (strategy specific to each application) |
| X | X | Optional selection of multiple tag SNPs per bin | |
| X | Simultaneous optimization of multiple genes or regions | ||
| X | Accounts for previously genotyped SNPs | ||
| X | Optimizes for the Infinium assay | ||
| X | Distribute conflicting SNP across multiple panel | ||
| X | X | Not limited to Hapmap Samples |