SNPPicker: High quality tag SNP selection across multiple populations

BMC Bioinformatics

Table 1 Differentiating features between various multi-population tag SNPs selection programs

SNPPicker	Snagger	multiPopTagSelect	Feature
X		X	Simultaneous multi-population optimization
X	X		Optimizes genotyping score
X	X		Optimizes conflicting tag SNPs
X	X	X	Functional class prioritization (strategy specific to each application)
X	X		Optional selection of multiple tag SNPs per bin
X			Simultaneous optimization of multiple genes or regions
X			Accounts for previously genotyped SNPs
X			Optimizes for the Infinium assay
X			Distribute conflicting SNP across multiple panel
X		X	Not limited to Hapmap Samples

Differentiating features between the multi-population tag SNPs algorithms. Features similar to all 3 applications were omitted.

ISSN: 1471-2105