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Table 2 The performance of peak callers.

From: PeakRanger: A cloud-enabled peak caller for ChIP-seq data

Algorithms

Elapsed time

Maximum memory footprint

PeakRanger

2m9s

2.9G

PeakSeq

5m11s

1.48G

SISSRs

15m18s

0.89G

FindPeaks

19m39s

4.2G

Erange

21m31s

0.81G

F-Seq

23m6s

7.27G

MACS

33m13s

1.04G

SPP

34m59s

1.98G

QuEST

36m51s

4.36G

CisGenome

55m39s

1.85G

GPS

64m18s

4.39G

  1. Running time and memory footprint was recorded for peak callers using the GABP dataset.