Skip to main content

Table 1 Profile of KEGG pathways with at least six matches to one of the stable modules

From: Inferring functional modules of protein families with probabilistic topic models

KEGG name

Modules

ABC transporters

5

Flagellar assembly

1

Porphyrin and chlorophyll metabolism

1

Oxidative phosphorylation

1

Bacterial secretion system

2

Two-component system

2

Phenylalanine, tyrosine and tryptophan biosynthesis

1

Phenylalanine metabolism

1

Starch and sucrose metabolism

1

  1. The modules were identified as being stable across nine independent runs of our method with k = 200.