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Table 1 Overview of patterns maintained after each preprocessing step and for all types of pattern discovery.

From: Extraction of consensus protein patterns in regions containing non-proline cis peptide bonds and their functional assessment

Exact pattern discovery

 

TEIRESIAS

sc_score > 0.90

Non-redundant

Number of patterns

4815

1622

231

Coverage (%)

100%

-

100

FDR (%)

3.58

-

0.25

Chemical equivalency set

 

TEIRESIAS

sc_score > 0.90

Non-redundant

Number of patterns

38904

8251

235

Coverage

100

-

100

FDR

6.79

-

0.03

Structural equivalency set

 

TEIRESIAS

sc_score > 0.90

Non-redundant

Number of patterns

32812

7347

225

Coverage

100

-

100

FDR

6.69

-

0.02