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Table 6 Comparison of available methodologies for the classification of amide peptide bonds.

From: Extraction of consensus protein patterns in regions containing non-proline cis peptide bonds and their functional assessment

Author

Method

Sensitivity (%)

Specificity (%)

Accuracy (%)

Pahlke et al. [8]

Chou-Fasman parameters

35

97

66

Exarchos et al. [9]

SVM classifier

77

65

71

Current work

exact pattern discovery

45

54

49

 

chemical equivalency set

76

58

67

 

structural equivalency set

77

63

70