Motif Enrichment. |
---|
Protein
|
Binding Motif
|
T-PIC
|
MACS
|
PeakSeq
|
cad |
| 0.805 | 0.971 | 0.895 |
gt | TTACGTAA | 2.347 | 1.59 | 1.042 |
hb1 | TTTTTT | 1.673 | 1.61 | 1.572 |
hb2 | TTTTTT | 1.722 | 1.641 | 1.956 |
kr1 |
| 1.748 | 1.523 | 1.099 |
kr2 |
| 1.732 | 1.508 | 1.01 |
FoxA1 | TGCATG | 2.547 | 1.682 | 1.976 |
STAT1 | TTCNNNGAA | 1.454 | 1.633 | 2.196 |
- The motif enrichment score is fold enrichment over random sequences. This score is listed for each protein and peak caller. The random sequences used have the same number and lengths as a given set of peaks, but the start site is randomly chosen from the chromosome. References containing the binding motifs are [25] (for cad, gt, hb, and kr), [26] (for FoxA1), and [27] (for STAT-1).