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Table 3 Motif Enrichment

From: Shape-based peak identification for ChIP-Seq

Motif Enrichment.

Protein

Binding Motif

T-PIC

MACS

PeakSeq

cad

TTTAT GA TG

0.805

0.971

0.895

gt

TTACGTAA

2.347

1.59

1.042

hb1

TTTTTT

1.673

1.61

1.572

hb2

TTTTTT

1.722

1.641

1.956

kr1

A G ANGGGT

1.748

1.523

1.099

kr2

A G ANGGGT

1.732

1.508

1.01

FoxA1

TGCATG

2.547

1.682

1.976

STAT1

TTCNNNGAA

1.454

1.633

2.196

  1. The motif enrichment score is fold enrichment over random sequences. This score is listed for each protein and peak caller. The random sequences used have the same number and lengths as a given set of peaks, but the start site is randomly chosen from the chromosome. References containing the binding motifs are [25] (for cad, gt, hb, and kr), [26] (for FoxA1), and [27] (for STAT-1).