Skip to main content

Table 1 The performance of CoreBoost based on features in CpG- or nonCpG-related proximal promoter and gene body region

From: Histone modification profiles are predictive for tissue/cell-type specific expression of both protein-coding and microRNA genes

HMV groups    Sensitivity PPV F-Score
  Promoter CpG 0.579 ± 0.016 0.764 ± 0.028 0.658 ± 0.006
Set I   non-CpG 0.889 ± 0.032 0.771 ± 0.021 0.825 ± 0.007
  Body CpG 0.594 ± 0.013 0.789 ± 0.021 0.678 ± 0.007
   non-CpG 0.876 ± 0.015 0.811 ± 0.013 0.842 ± 0.006
  Promoter CpG 0.523 ± 0.016 0.717 ± 0.021 0.605 ± 0.010
Set II   non-CpG 0.908 ± 0.033 0.790 ± 0.021 0.844 ± 0.007
  Body CpG 0.588 ± 0.015 0.736 ± 0.020 0.653 ± 0.008
   non-CpG 0.892 ± 0.014 0.821 ± 0.012 0.854 ± 0.006
  1. Averages and errors are given as the mean and standard deviation from 100 replicates. All of the CoreBoost performance statistics have a p-value < 1e-5.