Skip to main content

Table 2 The correlations between predictive HMV profiles in nonCpG-related and CpG-related promoters

From: Histone modification profiles are predictive for tissue/cell-type specific expression of both protein-coding and microRNA genes

   

CD4SE

High

   

H3K4me3

H3K79me1

H3K4me3

H3K79me1

non-CpG

Set I

H3K79me3

0.346

0.344

0.190

0.420

  

H2BK5me1

0.021

0.295

-0.072

0.378

 

Set II

H3K4me3

1.000

0.161

1.000

0.127

  

H3K27me1

0.006

0.231

0.014

0.355

CpG

  

H4K20me1

H3K27ac

H4K20me1

H3K27ac

 

Set I

H4K20me1

1.000

0.032

1.000

-0.009

  

H3K27ac

0.032

1.000

-0.009

1.000

 

Set II

H3K4me3

0.121

0.688

-0.013

0.799

  

H4K8ac

-0.031

0.512

-0.121

0.748

  1. Two of the most frequently selected HMV types by our CoreBoost model in Set I and Set II are represented in rows for each subset. The two HMV types selected by the model of Karlic et al are represented in columns. The numbers are the median values of Pearson's correlation coefficient of HMV profiles in the promoter of CD4SE genes or promoter of highly expressed genes.
Back to article page

BMC Bioinformatics

ISSN: 1471-2105

Contact us