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Table 6 Running time of the proposed method for data sets of different sizes.

From: A hidden two-locus disease association pattern in genome-wide association studies

Data size Running time
n = 5, 000, = 1, 000 3s
n = 5, 000, = 5, 000 76s
n = 5, 000, = 10, 000 303s
  1. All timings are carried out on one desktop computer with 3.0 GHz CPU and 4G memory running Windows XP professional x64 Edition system. Here n is the number of samples and is the number of SNPs.