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Table 2 Taguchi design plan.

From: Conformational and functional analysis of molecular dynamics trajectories by Self-Organising Maps

Map

size

Lattice

type

Shape

Learning

algorithm

Neighbour

function

Alpha

type

Radius

Training

length

Starting

alpha

Time

(s)

100

hexagonal

sheet

batch

Gaussian

inverse

2

1000

0.01

20

225

hexagonal

cylinder

batch

Bubble

power

3

3000

0.05

125

400

hexagonal

toroid

batch

Ep

linear

1

5000

0.09

450

100

hexagonal

sheet

sequential

Gaussian

linear

3

1000

0.09

270

225

hexagonal

cylinder

sequential

Bubble

inverse

1

3000

0.01

820

400

hexagonal

toroid

sequential

Ep

power

2

5000

0.05

12000

100

rectangular

cylinder

sequential

Gaussian

linear

1

5000

0.05

1350

225

rectangular

toroid

sequential

Bubble

inverse

2

1000

0.09

600

400

rectangular

sheet

sequential

Ep

power

3

3000

0.01

7700

100

rectangular

toroid

batch

Gaussian

power

1

3000

0.01

55

225

rectangular

sheet

batch

Bubble

linear

2

5000

0.05

205

400

rectangular

cylinder

batch

Ep

inverse

3

1000

0.09

95

100

hexagonal

toroid

sequential

Bubble

power

1

1000

0.05

290

225

hexagonal

sheet

sequential

Ep

linear

2

3000

0.09

1800

400

hexagonal

cylinder

sequential

Gaussian

inverse

3

5000

0.01

12800

100

rectangular

toroid

sequential

Bubble

inverse

3

3000

0.09

600

225

rectangular

sheet

sequential

Ep

power

1

5000

0.01

2500

400

rectangular

cylinder

sequential

Gaussian

linear

2

1000

0.05

2800

100

rectangular

sheet

sequential

Bubble

linear

3

5000

0.01

1400

225

rectangular

cylinder

sequential

Ep

inv

1

1000

0.05

650

400

rectangular

toroid

sequential

Gaussian

power

2

3000

0.09

8500

100

rectangular

cylinder

batch

Bubble

power

2

5000

0.09

85

225

rectangular

toroid

batch

Ep

linear

3

1000

0.01

40

400

rectangular

sheet

batch

Gaussian

inverse

1

3000

0.05

300

100

hexagonal

cylinder

batch

Ep

power

2

1000

0.01

17

225

hexagonal

toroid

batch

Gaussian

linear

3

3000

0.05

140

400

hexagonal

sheet

batch

Bubble

inverse

1

5000

0.09

450

100

hexagonal

cylinder

batch

Ep

linear

1

3000

0.09

50

225

hexagonal

toroid

batch

Gaussian

inverse

2

5000

0.01

230

400

hexagonal

sheet

batch

Bubble

power

3

1000

0.05

90

100

hexagonal

toroid

sequential

Ep

inverse

3

5000

0.05

1400

225

hexagonal

sheet

sequential

Gaussian

power

1

1000

0.09

630

400

hexagonal

cylinder

sequential

Bubble

linear

2

3000

0.01

7600

100

rectangular

sheet

batch

Ep

inverse

2

3000

0.05

49

225

rectangular

cylinder

batch

Gaussian

power

3

5000

0.09

236

400

rectangular

toroid

batch

Bubble

linear

1

1000

0.01

80

  1. See Table 1 for the parameter definition.